Install Lapack On Mac Os X

Got a problem when open the R.

Process: R [23438]
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: R [23438]
User ID: 501

To install Lapack libraries, you should first install GFortran which is included as a part of GCC. Run the following command in a terminal window: brew install gcc. Now, you can simply install Lapack by typing the following command in a terminal window: brew install lapack. Please let me know your questions in the comment section. Here are the steps I took to install PETSc on a Mac running OS X 10.3. To use gcc, g, f77, and the BLAS and LAPACK libraries included in Apple's vecLib.

In the case of the current Intel Chipset Device Software, that information is primarily the product name for the piece of hardware. Do not download this utility if your device manufacturer is recommending it to correct an 'AGP driver,' 'AGP GART,' or 'USB driver' issue; it will not correct your issue.Read attached readme and release notes files before installing.Keywords: 82801, ICH, MCHAbout Intel® driversThe driver or software for your Intel® component might have been changed or replaced by the computer manufacturer. Garmin chipset software installer package. An INF is a text file that provides the operating system with information about a piece of hardware on the system. This allows the operating system to show the correct name for that piece of hardware in Device Manager.Note: The Intel Chipset Device Software does not install drivers for AGP or USB.

Date/Time: 2016-05-03 02:38:25.066 -0600
OS Version: Mac OS X 10.11.4 (15E65)
Report Version: 11
Anonymous UUID: 1E914904-2D7C-1260-B018-6AFD159316C2

Sleep/Wake UUID: 500F1018-965C-44C5-8AD3-1B1AB2CD00A3

Time Awake Since Boot: 17000 seconds
Time Since Wake: 2400 seconds

System Integrity Protection: enabled

Crashed Thread: 0

Exception Type: EXC_BREAKPOINT (SIGTRAP)
Exception Codes: 0x0000000000000002, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information:
dyld: launch, loading dependent libraries

Dyld Error Message:
Library not loaded: /Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libRblas.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libR.dylib
Reason: image not found

Binary Images:
0x7fff62cd2000 - 0x7fff62d090d7 dyld (360.21) /usr/lib/dyld
0x7fff8b88a000 - 0x7fff8b88afff com.apple.quartzframework (1.5 - 21) <5DC3D0D9-9E3F-3AA5-92F1-F229907A49B9> /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff8e631000 - 0x7fff8f87cfeb com.apple.CoreGraphics (1.600.0 - 957) <8C9F8E1A-274C-36CE-93FB-49906A9B9EE2> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x7fff8feca000 - 0x7fff9022cf3f libobjc.A.dylib (680) <7489D2D6-1EFD-3414-B18D-2AECCCC90286> /usr/lib/libobjc.A.dylib
0x7fff90bde000 - 0x7fff91807fff com.apple.AppKit (6.9 - 1404.46) <2492D315-76B6-320B-B542-231FCA44CA48> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff94dd1000 - 0x7fff95247fff com.apple.CoreFoundation (6.9 - 1258.1) <943A1383-DA6A-3DC0-ABCD-D9AEB3D0D34D> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff96665000 - 0x7fff96666ffb libSystem.B.dylib (1226.10.1) /usr/lib/libSystem.B.dylib
0x7fff97a30000 - 0x7fff97a30fff com.apple.Cocoa (6.11 - 22) <807787AB-D231-3F51-A99B-A9314623C571> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff9a0e9000 - 0x7fff9a383fff com.apple.security (7.0 - 57337.40.85) <7C5B8DEF-3D02-3410-9BD3-2B1251F84D4B> /System/Library/Frameworks/Security.framework/Versions/A/Security
0x7fff9a8ab000 - 0x7fff9abebfff com.apple.WebKit (11601 - 11601.5.17.1) <6FA46AD7-3DF1-3654-A642-D9C5BE613ED7> /System/Library/Frameworks/WebKit.framework/Versions/A/WebKit
0x7fff9ad83000 - 0x7fff9b0d7fff com.apple.Foundation (6.9 - 1258) <51833143-6CAE-3E1C-9FBA-BCDEB48D4ADF> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fff9c5ed000 - 0x7fff9c7fafff libicucore.A.dylib (551.51) <35315A29-E21C-3CC5-8BD6-E07A3AE8FC0D> /usr/lib/libicucore.A.dylib
0x7fffa0585000 - 0x7fffa0587ff7 com.apple.ExceptionHandling (1.5 - 11) <086E1FB3-8B75-3241-9585-06C43B51F2C8> /System/Library/Frameworks/ExceptionHandling.framework/Versions/A/ExceptionHandling

Model: MacBookPro12,1, BootROM MBP121.0167.B16, 2 processors, Intel Core i5, 2.7 GHz, 8 GB, SMC 2.28f7
Graphics: Intel Iris Graphics 6100, Intel Iris Graphics 6100, Built-In
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1867 MHz, 0x80AD, 0x483943434E4E4E424C54414C41522D4E5544
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1867 MHz, 0x80AD, 0x483943434E4E4E424C54414C41522D4E5544
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x133), Broadcom BCM43xx 1.0 (7.21.95.175.1a6)
Bluetooth: Version 4.4.4f4 17685, 3 services, 18 devices, 1 incoming serial ports
Network Service: Wi-Fi, AirPort, en0
Serial ATA Device: APPLE SSD SM0128G, 121.33 GB
USB Device: USB 3.0 Bus
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 27.1

Installing CATS

CATS (Create and Analyse Time Series) is a program written by Simon Williams at theNational Oceanography Centre inLiverpool, UK.

The installation instructions below work for me on any system provided thatthe BLAS and LAPACK libraries, witha C interface, are installed correctly. Requirements are as follows for systemsthat I use and have tested on:

Linux

An optimized binary can be built on Linux (Ubuntu Lucid in my case) usingthe BLAS and LAPACK distributions available through the Ubuntu Software Center(under 'Applications'). If the BLAS and LAPACK shared and/or static librariesare installed, there should be no further problems following the installationinstructions below.

Mac OS X

A binary can be built for Mac using Apple's optimized versions of the BLASand LAPACK libraries, which are contained in the 'vecLib' sub-framework, partof the 'Accelerate' framework, as follows. This set of instructions assumesthat this and a C compiler are installed, for instance from the Command LineTools package (from February 2012 and Xcode 4.3 onwards) or the completeXcodepackage.

Installation

These instructions are based on the files found in the version 3.1.2 sourcecode.

1. Edit the following environment variables in the top-level include-file for make, e.g. make.inc.gcc:
   BINDIR = /usr/local/bin
   (this is where the executable file will be installed, so choose the directory based on your preferences)
   LAPACKLIB = -llapack
   BLASLIB = -lblas
   (these are the relevant BLAS and LAPACK libraries that will be used)
   CLAPACK, F77LIB and I77LIB are unnecessary and must be blank or commented out.
   To force a 64-bit executable to be compiled, add -m64 (or -arch x86_64 for Mac OS X) to CFLAGS.
   
2. Both the Ubuntu and Apple implementations of the BLAS and LAPACK libraries appear to support a C interface directly for all routines used by CATS. This being the case, there should be no need for an additional 'wrapper library' as described under 'Optimisation and the clapack/blas libraries' on Simon Williams' CATS web page. Edit lib/timeseries.h to remove the lines
   #include 'f2c.h'
   #include 'blaswrap.h'
   
3. Change to the time/ directory and, if necessary, edit the Makefile to ensure that the correct include-file for make will be read, e.g.
   include ./make.inc.gcc
   Then run
   make cleaner
   make
   make clean
   
4. Change to the lib/ directory and, if necessary, edit the Makefile to ensure that the correct include-file for make will be read, e.g.
   include ./make.inc.gcc
   Also, the CLAPACK variable is superfluous and undefined here, so comment the first and uncomment the second line defining INCLUDEDIRS and LIBDIRS, e.g.
   #INCLUDEDIRS = -I$(CLAPACK)/F2CLIBS -I$(CLAPACK) -I./time -I. -I./lib
   INCLUDEDIRS = -I./time -I. -I./lib
   #LIBDIRS = -L$(CLAPACK)/F2CLIBS -L$(CLAPACK) -L. -L./lib -L./time
   LIBDIRS = -L. -L./lib -L./time
   Then run
   make cleaner
   make
   make clean
   
5. Change to the analysis/ directory and, if necessary, edit the Makefile to ensure that the correct include-file for make will be read, e.g.
   include ./make.inc.gcc
   Again, CLAPACK and, here, ATLAS are superfluous and undefined, so comment the first and uncomment the second line defining INCLUDEDIRS and LIBDIRS, e.g.
   #INCLUDEDIRS = -I$(ATLAS)/inc -I$(CLAPACK) -I$(CLAPACK)/F2CLIBS -I. -I./lib -I./time
   INCLUDEDIRS = -I. -I./lib -I./time
   #LIBDIRS = -L$(ATLAS)/lib -L$(CLAPACK) -L$(CLAPACK)/F2CLIBS -L. -L./lib -L./time
   LIBDIRS = -L. -L./lib -L./time
   Then run
   make cleaner
   make
   sudo make install
   make clean
   

Speed tests

Running CATS on the time series in the example/ directory, estimatingannual and semi-annual cycle terms in addition to a trend in the presence of avariable white noise plus unspecified power-law noise model, produced thefollowing results for comparison:

CATS options: --model=vw: --model=pl:--sinusoid=1y1

* Courtesy of Reed Burgette (New Mexico State University)
† Courtesy of Julie Elliott (Purdue University)

Last updated: 2017-06-30, MIT